Bioinformatics Engineer II

Compensation:
Pay Range: $90,000 - $140,000 USD

Essential Functions:

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Drive technical solutions to problems, including end-to-end process flow from ideation to release, and estimating time and complexity

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Design and develop custom software according to ticket specifications

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Act as a role model for the team, settings standards for excellence and mentoring junior engineers

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Provide clear and consistent feedback on code reviews

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Meet with clients, partners, product owners, or other stakeholders to understand and clarify workflows and requirements

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Highlight blockers or issues arising during development to resolve in a timely manner

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Monitor process and log information, troubleshooting issues as needed

- Other duties as assigned.

Qualifications:

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Bachelor's degree (+ at least 5 years work experience), Master’s degree (+ at least 2 years work experience), or PhD degree in Bioinformatics, Computer Science, or a related field

- Proficient in Python coding

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Intermediate-to-advanced experience working in Linux environments (e.g. compiling programs from source, performing text manipulations with pipes)

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Intermediate-to-advanced experience in relational databases (e.g., MySQL, PostgreSQL, Microsoft SQL Server)

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Proficiency with software engineering best practices, including git version control, unit testing, and documentation

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Knowledge of next-generation sequencing technologies and standard bioinformatics data formats (e.g., FASTQ, BAM, VCF, GTF)

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Excellent communication and interpersonal skills.

Preferred:

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Experience with cloud computing environment (AWS, Azure, Google Cloud)

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Familiarity with Atlassian suite applications (Jira, Confluence, BitBucket)

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Knowledge of clinical genetics databases (e.g., Clinvar, HGMD) and HGVS sequence variant nomenclatures

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Prior experience in biology and/or an understanding of mutation analysis

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Creating and developing Docker containers

- Experience developing APIs

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Experience with CI/CD (e.g. Bamboo, Jenkins, AWS Code Pipeline)

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Equal Opportunity Employer

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Originally posted on Himalayas